CESSHIV-1 database

General information on HIV-1 isolate

# 1795

Accession number	EF370365
Name	02PGU10_2277
Subtype	B
Country	South Korea
Sampling year	2002
Patient	PGU

EF370365 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttt-ag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

AY860947(#1342) AY894352(#3301) EF057102(#981)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy