CESSHIV-1 database

General information on HIV-1 isolate

# 2788

Accession number	EU170146
Name	luBF_11_04
Subtype	CRF42_BF
Country	Luxembourg
Sampling year	2004

EU170146 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtccgtg tggaaaatct ctagcagtgg cgcccgaaca gggacytgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EU170149(#2791) EU170151(#2793)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy