CESSHIV-1 database

General information on HIV-1 isolate

# 2727

Accession number	AB485647
Name	ZAM18
Subtype	C
Country	Zambia
Sampling year	1989
Patient	ZAM18

AB485647 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AB485646(#2726) AM076882(#1584) DQ093604(#508) DQ369976(#642)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy