CESSHIV-1 database

General information on HIV-1 isolate

# 1584

Accession number	AM076882
Name	PG177_1
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG177

AM076882 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AB485646(#2726) AB485647(#2727) DQ093604(#508) DQ369976(#642)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy