CESSHIV-1 database

General information on HIV-1 isolate

# 642

Accession number	DQ369976
Name	03ZAPS124MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	124MB

DQ369976 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AB485646(#2726) AB485647(#2727) AM076882(#1584) DQ093604(#508)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy