CESSHIV-1 database

General information on HIV-1 isolate

# 508

Accession number	DQ093604
Name	04ZASK173B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	173B1

DQ093604 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AB485646(#2726) AB485647(#2727) AM076882(#1584) DQ369976(#642)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy